The Qur'an itself does not specify which prayer is the "middle prayer" (salat al-wusta) in Qur'an 2:238.
According to Shi'i hadith (via Imam al-Baqir and Imam al-Sadiq), the "middle prayer" is the noon (zuhr) prayer (and possibly specifically the Friday prayer).
This corresponds with the idea that the sun is in the middle of the sky at this time, and so it is a middle prayer.
Sunni scholars mostly say that it is the 'asr prayer, although some say it is the zuhr prayer, and a few say it is the fajr prayer (as you have suggested). These views are also based on hadith/interpretation of hadith and an interpretation of what is meant by 'middle'.
The Qur'an speaks to us all individually, and I don't think there is any problem if this ayah speaks to different people differently since it is reminding us to focus on our prayers. Some people may need more focus on their fajr prayer (possibly because they are sleepy!), while others may need more focus on their noon/afternoon prayers, because they are busy.
You would definitely have enough time in your busy morning, while being awake, to take a 2 minute break and fast. If your employer does not allow it, remove yoursel from this job.
It is a major sin to deliberately not pray, and all the blessings and positivity will be taken away and drained from you if you were to intentionally not pray and take it lightly.
It is obligatory to perform every obligatory Prayer on its time and ir us sinful to deliberately miss any obligatory Prayer. We must make every possible arrangement to perform our obligatory Prayers on time and never miss any of them.
We need to organize our sleeping time to be able to get up and perform our obligatory Prayers.
We might use an alarm or request some one to wake us up for obligatory Prayers.
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